3
:
,然后提取列表的头和尾-连接头,添加
ch
中国
最后一个附加到列表
L
:
df = pd.DataFrame(["1:77631829:-:1:77641672:-","1:77631829:-:1:77641672:-"],
columns=["position"])
print (df)
position
0 1:77631829:-:1:77641672:-
1 1:77631829:-:1:77641672:-
L = []
for x in df["position"]:
*i, j = x.split(':', 3)
L.append(("chr" + ':'.join(i) + "chr" + j))
df['new'] = L
print (df)
position new
0 1:77631829:-:1:77641672:- chr1:77631829:-chr1:77641672:-
1 1:77631829:-:1:77641672:- chr1:77631829:-chr1:77641672:-
带注释的黑客解决方案:
'chr' + df['position'].str.replace('-:', '-:chr')
使用列表理解和f字串更快:
df['new'] = [f"ch{x.replace('-:', '-:chr')}" for x in df['position']]
性能
df = pd.DataFrame(["1:77631829:-:1:77641672:-","1:77631829:-:1:77641672:-"],
columns=["position"])
#[20000 rows x 1 columns]
df = pd.concat([df] * 10000, ignore_index=True)
In [226]: %%timeit
...: L = []
...: for x in df["position"]:
...: *i, j = x.split(':', 3)
...: L.append(("chr" + ':'.join(i) + "chr" + j))
...:
...: df['new1'] = L
...:
18.9 ms ± 1.25 ms per loop (mean ± std. dev. of 7 runs, 100 loops each)
In [227]: %%timeit
...: df['new2'] = "chr" + df["position"].str.split(":").str[:3].str.join(":") + "chr" + df["position"].str.split(":").str[3:].str.join(":")
...:
50.8 ms ± 1.2 ms per loop (mean ± std. dev. of 7 runs, 10 loops each)
In [228]: %%timeit
...: df['new3'] = 'chr' + df['position'].str.replace('-:', '-:chr')
...:
21.5 ms ± 140 µs per loop (mean ± std. dev. of 7 runs, 10 loops each)
In [229]: %%timeit
...: df['new4'] = [f"ch{x.replace('-:', '-:chr')}" for x in df['position']]
...:
8.59 ms ± 130 µs per loop (mean ± std. dev. of 7 runs, 100 loops each)