在bash中运行CSH可执行文件会引发语法错误

我需要在我的MacOS X High Sierra上运行NACCESS程序。

最突出的错误是 if: Expression Syntax.

此错误可能是因为NACCESS可执行文件是具有 #!/bin/csh 在它的第一行。

我把第一行改成 #!/bin/bash 开始出现错误,比如 ./naccess: line 14: syntax error near unexpected token `1' ./naccess: line 14: ` exit(1)'

同样,我认为这是因为可执行文件需要在CSH shell中执行,而不是bash。 exit(1) exit 1 ,据 this resource .

我试着打字 csh 进入终端切换外壳,但 echo $SHELL 指挥部只是告诉我我还在狂欢。

grep '^#!' /usr/bin/* 找不到任何CSH弹壳。我试图下载 tcsh 使用自制。但我真的不知道我现在在做什么。

我知道CSH shell是不受鼓励的,但是如何让CSH shell在我的Mac上运行,或者如何让nacess运行?

[编辑] 以下是NACCESS代码的前几行:

(请注意,我是用.pdb file参数运行它的,并且我已经适当地将路径\u设置为\u naccess\u repository。我真的明白了 usage naccess pdb_file [-p probe_size] [-r vdw_file] [-s stdfile] [-z zslice] -[hwyfaclqb] 如果我只跑 ./naccess )

#!/bin/csh
set EXE_PATH = /path/to/repo
#naccess_start

set nargs = $#argv
if ( $nargs < 1 ) then
   echo "usage naccess pdb_file [-p probe_size] [-r vdw_file] [-s stdfile] [-z zslice] -[hwyfaclqb]"
   exit(1)
endif

set PDBFILE = 0
set VDWFILE = 0
set STDFILE = 0
set probe = 1.40
set zslice = 0.05
set hets = 0
set wats = 0
set hyds = 0
set full = 0
set asao = 0
set cont = 0
set oldr = 0
set nbac = 0

while ( $#argv )
  switch ($argv[1])
     case -[qQ]:
    echo "Naccess2.1 S.J.Hubbard June 1996"
    echo "Usage: naccess pdb_file [-p probe_size] [-r vdw_file] [-s stdfile] [-z zslice] -[hwyfaclq]"
    echo " "
    echo "Options:"
    echo " -p = probe size (next arg probe size)"
    echo " -z = accuracy (next arg is accuracy)"
    echo " -r = vdw radii file (next arg is filename)"
    echo " -s = standard accessibilities file (next arg is filename)"
    echo " -h = hetatoms ?"
    echo " -w = waters ?"
    echo " -y = hydrogens ?"
    echo " -f = full asa output format ?"
    echo " -a = produce asa file only, no rsa file ?"
    echo " -c = output atomic contact areas in asa file instead of accessible areas"
    echo " -l = old RSA output format (long)"
    echo " -b = consider alpha carbons as backbone not sidechain"
    echo " -q = print the usage line and options list"
    echo " "
        exit
        breaksw
     case -[pP]:
    shift
    set probe = $argv[1]
    breaksw
     case -[zZ]:
        shift
        set zslice = $argv[1]
    breaksw
     case -[hH]:
        set hets = 1
    breaksw
     case -[wW]:
        set wats = 1
        breaksw
     case -[yY]:
        set hyds = 1
        breaksw
     case -[rR]:
        shift
        set VDWFILE = $argv[1]
        breaksw
     case -[sS]:
        shift
        set STDFILE = $argv[1]
        breaksw
     case -[fF]:
        set full = 1
        breaksw
     case -[aA]:
        set asao = 1
        breaksw
     case -[cC]:
        set cont = 1
        breaksw
     case -[lL]:
        set oldr = 1
        breaksw
     case -[bB]:
        set nbac = 1
        breaksw
     default:
        if ( -e $argv[1] && $PDBFILE == 0 ) then
       set PDBFILE = $argv[1]
        endif
    breaksw
  endsw
  shift
end
#
if ( $PDBFILE == 0 ) then
  echo "usage: you must supply a pdb format file"
  exit(1)
endif

[编辑]我没有正确设置路径>&书信电报;所以这个问题主要是关于如何在bash中运行csh脚本。这个csh脚本没有问题。