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在ubuntu 16.04上安装rgdal时遇到更多问题

rgdal gdal anaconda r

Leosar · 技术社区 · 7 年前

http://www.sarasafavi.com/installing-gdalogr-on-ubuntu.html 在其他的回答中也有这样的解释 trouble in installing rgdal on ubuntu 16.04 意思是来自ppa:ubuntugis。

然后,当我尝试安装rgdal时,出现以下错误

> install.packages("rgdal")
Installing package into â/home/leonardo/R/x86_64-pc-linux-gnu-library/3.5â
(as âlibâ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/rgdal_1.3-4.tar.gz'
Content type 'application/x-gzip' length 1664774 bytes (1.6 MB)
==================================================
downloaded 1.6 MB

* installing *source* package ârgdalâ ...
** package ârgdalâ successfully unpacked and MD5 sums checked
configure: R_HOME: /usr/lib/R
configure: CC: gcc -std=gnu99
configure: CXX: g++
configure: C++11 support available
configure: rgdal: 1.3-4
checking for /usr/bin/svnversion... no
configure: svn revision: 766
checking for gdal-config... /home/leonardo/anaconda3/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 2.2.2
checking GDAL version >= 1.11.4... yes
checking gdal: linking with --libs only... no
checking gdal: linking with --libs and --dep-libs... no
/usr/bin/x86_64-linux-gnu-ld: warning: libproj.so.12, needed by /home/leonardo/anaconda3/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/usr/bin/x86_64-linux-gnu-ld: warning: libpoppler.so.71, needed by /home/leonardo/anaconda3/lib/libgdal.so, not found (try using -rpath or -rpath-link)
/usr/bin/x86_64-linux-gnu-ld: warning: libxerces-c-3.2.so, needed by /home/leonardo/anaconda3/lib/libgdal.so,

...

500 lines more

...

/home/leonardo/anaconda3/lib/libgeos_c.so: undefined reference to `geos::geom::PrecisionModel::PrecisionModel(double)'
collect2: error: ld returned 1 exit status
configure: Install failure: compilation and/or linkage problems.
configure: error: GDALAllRegister not found in libgdal.
ERROR: configuration failed for package ârgdalâ
* removing â/home/leonardo/R/x86_64-pc-linux-gnu-library/3.5/rgdalâ
Warning in install.packages :
  installation of package ârgdalâ had non-zero exit status

我之前安装的python anaconda似乎有问题,我使用

conda remove gdal

1 回复 | 直到 7 年前

Leosar 7 年前

解决这一问题的唯一方法是按照 https://conda.io/docs/user-guide/install/linux.html#uninstalling-anaconda-or-miniconda 对ubuntu 16.04做了一些小的修改后,您必须打开一个终端并删除anaconda安装目录:

rm -rf ~/anaconda3

rm -rf ~/.condarc ~/.conda ~/.continuum

编辑 ~/.bashrc

之后安装rgdal

install.packages("rgdal")

没有问题。